Presentations

  • S. Mangul, N. Wu, N. Mancuso, A. Zelikovsky, R. Sun and E. Eskin, “Inferring HIV Quasi-spices from Deep Sequencing Data “, Poster at 63rd American Society of Human Genetics Annual Meeting, Boston, MA, USA 
  • R. A. Opho , S. de Jong, J. Horvath, E. Y. Kang, S. Mangul, E. Eskin, “Human Genetic Study of Gene Expression from RNAseq Data Stage I: Alternative Splicing and Isoform detection”, Poster at Cold Spring Harbor for the Biology of Genomes meeting (2013), Cold Spring Harbor, NY, USA
  • S. Mangul, N. Wu, N. Mancuso, A. Zelikovsky, R. Sun and E. Eskin, “Inferring HIV Quasispecies from Paired-end Reads”, Poster at 17th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2013), Beijing, China, travel award
  • S. Mangul, A. Caciula, S. Al Seesi, D. Brinza, I. Mandoiu and A. Zelikovsky, “TRIP : A Method for Novel Transcript Reconstruction from Paired-End RNA-Seq Reads”, Poster at 11th European Conference on Computational Biology(ECCB 2012), Basel, Switzerland, travel award
  • S. Mangul, A. Caciula, S. Al Seesi, O. Sakarya, I. Mandoiu and A. Zelikovsky, “An Integer Programming Approach to Novel Transcript Reconstruction from Paired-End RNA-Seq Reads”, Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology(ISMB 2012), Long Beach, CA, travel award
  • S. Mangul, “An Integer Programming Approach to Novel Transcript Reconstruction from Paired-End RNA-Seq Reads”, invited talk, Student Council Symposium 2012/ISMB 2012, Long Beach, CA
  • S. Mangul, A. Caciula, I. Mandoiu and A. Zelikovsky, “An Integer Programming Approach to Novel Transcript Reconstruction from Paired-End RNA-Seq Reads”, Poster at 8th International Symposium on Bioinformatics Research and Applications (ISBRA 2012), Dallas, TX, best poster award
  • S. Mangul, “Computational methods for transcriptome reconstruction and quantification using RNA-seq”, public lecture, Center of Molecular Biology, University of Academy of Sciences of Moldova(2012), Chisinau, Moldova
  • S. Mangul, “Mathematical and Computational Approaches in High- Throughput Genomics”, public lecture, Center of Molecular Biology, University of Academy of Sciences of Moldova(2012), Chisinau, Moldova
  • S. Mangul, “It’s a DNA World: An introduction to Next Generation Sequencing”, public lecture, Center of Molecular Biology, University of Academy of Sciences of Moldova(2012), Chisinau, Moldova
  • S. Mangul, A. Caciula, I. Mandoiu and A. Zelikovsky, “An Integer Programming Approach to Novel Transcript Reconstruction from Paired-End RNA-Seq Reads”, Poster at Workshop on Biostatistics and Bioinformatics, Department of Mathematics and Statistics, Georgia State University (2012), Atlanta, GA, USA
  • S. Mangul, A. Caciula, N. Mancuso, I. Mandoiu and A. Zelikovsky, “An Integer Programming Approach to Novel Transcript Reconstruction from Paired-End RNA-Seq Reads”, Poster at 16th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2012), Barcelona, Spain
  • S. Mangul, “Novel Transcript Reconstruction from Paired-End RNA-Seq Reads Using Fragment Length Distribution”, invited talk, 2nd Workshop on Computational Advances for Next Generation Sequencing (CANGS2012), Las Vegas, NV, USA
  • S. Mangul, “The Next, Next Generation Sequencing  – From Semiconductor to Single Molecule”, Life Technologies UCLA Embassy Info Session(2011), UCLA ISPE, University of California, Los Angeles, CA, USA
  • S. Mangul, A. Caciula, I. Mandoiu and A. Zelikovsky, “RNA-Seq based novel transcripts identification in partially annotated genomes”, Poster at 8th International Conference on Bioinformatics “From Genomics to Synthetic Biology”(2011), Atlanta, GA, USA
  • S. Mangul, A. Caciula, I. Mandoiu and A. Zelikovsky, “RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes”, Poster at Workshop on Next-generation Sequencing Technology and Algorithms for Primary Data Analysis(2011), Institute for Pure and Applied Mathematics, University of California, Los Angeles, CA, USA
  • S. Mangul, I. Astrovskaya, M. Nicolae, B. Tork, I. Mandoiu and A. Zelikovsky, “Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data”, Mathematical and Computational Approaches in High-Throughput Genomics(2011), Institute for Pure and Applied Mathematics, University of California, Los Angeles, CA, USA
  • S. Mangul, D. Brinza, F. Hyland, “Orthogonal Error Correction Codes in Next Generation Sequencing”, Poster at Life Technologies Intern Poster Session(2011), Foster City, CA, USA, best poster award
  • S. Mangul, I. Astrovskaya, M. Nicolae, B. Tork, I. Mandoiu and A. Zelikovsky, “Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data”, Poster at Georgia Life Sciences Summit : Innovation for a Healthier World (2011), Atlanta, GA, USA
  • S. Mangul, I. Astrovskaya, B. Tork, I. Mandoiu and A. Zelikovsky , “Viral Quasispecies Reconstruction Based on Unassembled Frequency Estimation”, 7th International Symposium on Bioinformatics Research and Applications (ISBRA 2011),  Changsha, China, travel award
  • S. Mangul and A. Zelikovsky, “Haplotype Discovery Based on Unassembled Sequences Estimation”, Poster at First Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMBseqCCB 2011), Vancouver, BC, Canada
  • S. Mangul and A. Zelikovsky, “Haplotype discovery from high-throughput sequencing data”, Poster at 1st IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS 2011), Orlando, FL, USA, travel award
  • I. Astrovskaya, B. Tork, S. Mangul, K. Westbrooks, I. Mandoiu, P. Balfe and A. Zelikovsky, “VISPA: Viral Spectrum Assembling Method”, Poster at 1st IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS 2011), Orlando, FL, USA, best poster award
  • I. Astrovskaya, B. Tork, S. Mangul, K. Westbrooks, I. Mandoiu, P. Balfe and A. Zelikovsky, “HCV Quasispecies Spectrum Reconstruction from 454 Pyrosequencing Reads”, Poster at Georgia Life Sciences Summit : Innovation for a Healthier World (2010), Atlanta, GA, USA
  • S. Mangul and A. Zelikovsky, “Haplotype discovery from RNA-Seq data”, Poster at Georgia Life Sciences Summit : Innovation for a Healthier World (2010), Atlanta, GA, USA
  • M. Nicolae, S. Mangul, I. Mandoiu and A. Zelikovsky, “Estimation of alternative splicing isoform frequencies from RNA-Seq data”, Dagstuhl seminar on Structure Discovery in Biology: Motifs, Networks and Phylogenies (2010), Dagstuhl, Germany
  • M. Nicolae, S. Mangul, I.I. Mandoiu and A. Zelikovsky, “Estimation of alternative splicing iso- form frequencies from RNA-Seq data”, Poster at 6th International Symposium on Bioinformatics Research and Applications (ISBRA 2010), Storrs, CT, USA
  • S. Mangul and A. Zelikovsky, “Haplotype spectrum reconstruction from sequencing reads”, Poster at 6th International Symposium on Bioinformatics Research and Applications (ISBRA 2010), Storrs, CT, USA
  • S. Mangul and A. Zelikovsky, “MLE-based 2SNP Phasing”, Poster at 5th International Symposium on Bioinformatics Research and Applications (ISBRA 2009), Fort Lauderdale, FL, USA

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